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International Solanaceae Conference/Solanaceae Genomics Network
Potato Association of America

Presentations for Program:: Bioinformatics - Afternoon

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SessionDate/TimeLocationTitleAuthorsKeywords

Tuesday, July 25th

Tuesday, July 25th
8:00 am to 10:00 pm · Ballroom CD/Monona Terrace
Session Poster: Contributed Posters: Poster session
Presiding: Conference Administrator,
Poster-62July 25th
8:00 am
Ballroom CD/Monona TerraceAn Italian Platform For Solanaceae Genomics
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Chiusano, Maria Luisa, D Agostino, Nunzio, Traini, Alessandra, Raimondo, Enrico, Aversano, Mario, Frusciante, Luigi.Genome Annotation
EST database
expression pattern
integrated bioinformatic platform
Poster-63July 25th
8:00 am
Ballroom CD/Monona Terrace“BAC sequencing and annotation driven by experimental data: an application for a serine-threonine kinase on chromosome 12.”
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Torre, Sara, D Agostino, Nunzio, Chiusano, Maria Luisa, Frusciante, Luigi, Alessandra, Traini, Barone, Amalia.Sequence finishing BAC extension Assembly Experimental annotation
Poster-64July 25th
8:00 am
Ballroom CD/Monona TerraceSRG Database: a new tool for solanaceae resistance genes analysis
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Ercolano, Maria Raffaella, Faino, Luigi, Melito, Sara, Sanseverino, Walter, Roma, Guglielmo, Stupka, Elia, Frusciante, Luigi.Resistance
database
Poster-65July 25th
8:00 am
Ballroom CD/Monona TerraceAb initio prediction of protein binding sites: an application on tomato inhibitor-II*
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Raimondo, Enrico, Chiusano, Maria Luisa.tomato inhibitor-II
prediction of protein binding sites
protein interactions
proteinase inhibitors

Wednesday, July 26th

Wednesday, July 26th
1:30 pm to 5:30 pm · Hall of Ideas Room E/Monona Terrace
Session SAT07: Wednesday Satellite Session: Bioinformatics
Presiding: Heiko Schoof, Max-Planck-Institute for Plant Breeding Research
July 26th
1:30 pm
Hall of Ideas Room E/Monona TerraceIntroduction
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SAT07-1July 26th
1:40 pm
Hall of Ideas Room E/Monona TerraceConserved co-expression networks in solanaceous plant species
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Rensink, WA, Hart, A, Rehfeld, K, Liu, J, Ly, E, Buell, CR.co-expression
regulatory networks
SAT07-2July 26th
2:20 pm
Hall of Ideas Room E/Monona TerraceThe SOL Genomics Network, a comparative genomics resource for the Solanaceae and related Euasterids
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Mueller, Lukas, Binns, John, Buels, Robert, Kreuter, Marty, Lin, Chenwei, Menda, Naama, Skwarecki, Beth, Tanksley, Steve.database
Bioinformatics
comparative genomics
genome sequencing
tomato
Asterids
Solanaceae
SAT07-3July 26th
2:40 pm
Hall of Ideas Room E/Monona TerraceMapping expressed sequence onto genomic data: evaluation of tools for a reliable experimental annotation
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Traini, Alessandra, Chiusano, Maria Luisa.
SAT07-4July 26th
3:00 pm
Hall of Ideas Room E/Monona TerraceAnnotation Tools and Annotation in the UK Tomato Chromosome 4
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Bruggmann, Remy, Buchan, Daniel, Abbott, James, Butcher, Sarah, Nicholson, Christine, McLaren, Karen, Humphray, Sean, Rogers, Jane, Bryan, Glenn, Seymour, Graham, Bishop, Gerard, Mayer, Klaus FX.annotation
apollo
tomato
Bioinformatics
SAT07-5July 26th
3:20 pm
Hall of Ideas Room E/Monona TerraceImplementation of Ontologies for Solanaceae Phenotypes
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Menda, Naama, Mueller, Lukas, Tanksley, Steve.ontology
phenotype
annotation
SGN
July 26th
3:40 pm
Hall of Ideas Room E/Monona TerraceBreak
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SAT07-6July 26th
4:00 pm
Hall of Ideas Room E/Monona TerraceSolanaceae bioinformatics: Open standards, data availability, visions
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Schoof, Heiko.Bioinformatics
Genome Annotation
Discussion
Standards
SAT07-7July 26th
4:15 pm
Hall of Ideas Room E/Monona TerraceOpen discussion
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